Official document

OBCX_Users_Guide_ja.1.13.pdf

First set up the ssh key according to the official document.

We use git and dvc to transfer code and data to and from Oaxbridge.

Folder structure

If your group is gv47 and your account is v47001, the folder structure is

/home/v47001

/work/gv47/

/work/gv47/v47001

...

The computation server cannot access the home directory. Therefore, you should clone your project to the work directory.

Set up software

Miniconda

  1. Set up the environmental variables
module load miniconda/3.9

export CONDA_ENVS_PATH=/work/gv47/v47001/.conda/envs

export CONDA_PKGS_DIRS=/work/gv47/v47001/.conda/pkgs
  1. Create conda environment and install packages.
conda create -p /work/gv47/v47001/conda_env python=3.9

source activate /work/gv47/v47001/conda_env

(/work/gv47/v47001/conda_env) conda install -c conda-forge numpy

R

module load R
mkdir /work/gv47/v47001/R
mkdir /work/gv47/v47001/R/library
vi ~/.Renviron

Write R_LIBS = /work/gv47/v47001/R/library in /work/gv47/v47001/.Renviron

AWS CLI

Follow the instruction in: